I have a Mikuni heater on my 325. It has needed new glow plugs with increasing frequency and the expert advice has been to have it serviced (major decoke).
As far as I can ascertain, the big power draw is when the heater starts (when the glow plug is in use). After that, the power is needed only for the fuel pump and the air fan.
I suspect that the glow plug is in use for every start up if the thermostat is set low enough to require this.
Why not try running your engine for the heater start up, then relying on battery power?
Your question implies you have two batteries. So long as you have a reserve engine-starting battery, you can experiment as above. I'm assuming your arrangement charges both batteries once the engine is running.
Hope this works out.
Mike Lockwood
Lucky Devil
Parker 325/32
Mike Lockwood
Lucky Devil
Parker 325/35